Is it correct to try to use the newest ClinEff annotation software for the tuberculosis genome?
Is it correct to try to use the newest ClinEff annotation software for the tuberculosis genome?
snpeff
clineff
annotation
• 1,858 views
•
link
written
by
human_genomeXXX
1
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
How many short-reads are enough to do a valid bacterial genome assembly using Velvet and to perfor…
written by bioinformatics_bel 2I need to know how many short-reads are enough to do a valid bacterial genome assembly using Velvet and to perform a good annotation? Is …
-
What tuberculosis web portal has API usable to be employed in custom software?
written by matveyspr 1What tuberculosis web portal has API usable to be employed in custom software? Is it possible, for example, to fetch tuberculosis gene description information from …
-
Need help to choose 2-3 genome annotation software from the list at https://omictools.com/genome-a…
written by human_genomeXXX 1Need help to choose 2-3 genome annotation software from the list at https://omictools.com/genome-annotation-category Input will be a VCF files generated from the Pilon, BBMap, GATK …
-
How to download tuberculosis reference using the last version of SNPEff?
written by human_genomeXXX 1How to download tuberculosis reference using the last version of SNPEff? I have tried java -jar snpEff.jar download -v m_tuberculosis.reference
-
How to reduce annotation errors using SNPEff on BBMap`s and Pilon`s VCFs?
written by human_genomeXXX 1How to reduce annotation errors using SNPEff on BBMap and Pilon VCFs? I get "chromosome not found" error in Tuberculosis genome data processing experiments and …
-
What R packages and Python/java/ruby libraries are in use today for microarray`s ttest, ANOVA and c…
written by human_genomeXXX 15 years ago I did it with Limma, MeV, Expander software. Are there any newest modern approaches today for microarray conventional data processing to find …
-
What parameters to set in SNPEff to improve annotation results from the Pilon VCF input to SNPEff?
written by human_genomeXXX 1I run the code line: java -Xmx10G -jar snpEff.jar -c snpEff.config -s SNPEffOutputStats.html -v -no-downstream -no-upstream m_tuberculosis_H37Rv pilon_output.pilon.vcf > SNPEffSampleGenome_merge.var.ann.vcf And it produces results, but …
-
What software can better substitute SNPEff for the tuberculosis whole genome annotation?
written by human_genomeXXX 1What software can better substitute SNPEff for the tuberculosis whole genome annotation?
-
How to download and set up a Tuberculosis H37rv whole genome in SNPEff software?
written by human_genomeXXX 1How to download and set up a Tuberculosis H37rv genome in SNPEff software? I have tried and it can`t read the reference .gb genome. How …
-
Annovar data base
written by lamlam 1Hello We use annovar for annotation mycobacterium tuberculosis i want Data base for Myco tuberculosis ? plz give a link for download database