What exactly do you need?
There are at least several of such DBs.
http://mycobacterium.biocyc.org/
http://www.sanger.ac.uk/resources/downloads/bacteria/mycobacterium.html
This is a paper about TB, 2009:
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686437/
This is another paper, it is from 2012:
http://database.oxfordjournals.org/content/2014/bau035.full
It is something like a list of all existing now-a-days TB-databases:
https://bioinformatictools.wordpress.com/tag/mycobacterium-tuberculosis/
It's a recent paper about TB-variation DB:
http://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2164-15-308
A paper about TB-divergence DB:
http://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2164-9-373
A paper about TB drug-resistance DB:
"MUBII-TB-DB: a database of mutations associated with antibiotic resistance in Mycobacterium tuberculosis".
http://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-15-107
Unfortunately there are even more than these DBs...
i need the right Data Base for using annovar for mycobacterium tuberculosis ! And i want to know how to download it when i used http://www.sanger.ac.uk/resources/downloads/bacteria/mycobacterium.html with command line: $ perl annotate_variation.pl --downdb --webfrom http://www.sanger.ac.uk/resources/downloads/bacteria/mycobacterium.html /path/annovar/humandb i have an error on run
Are you sure ANNOVAR is the right tool for your bacterium? I mean I have used ANNOVAR to annotate variants (mutations) in human, and to get SNP information, and allele frequencies, etc.
I cannot exactly see how this would be interesting for Mycobacterium samples? What is it exactly what you want to do, please tell more about your experiment and goals.
No I didn't suggest anything, sorry, I am just trying to think along with you.
I don't work with bacterial data, only human or mouse mostly. But I can't imagine that a bacterial species like Mycobacterium tuberculosis would have a SNP database for all variants in the 'population', which is comparable to dbSNP for humans. In this dbSNP allele frequencies of populations are reported, for thousand of individuals. I don't know how many individual strains of mycobacterium are sequenced, and if they are all well reported in a database which can be used by your desired programs.
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