What software can better substitute SNPEff for the tuberculosis whole genome annotation?
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7.2 years ago

What software can better substitute SNPEff for the tuberculosis whole genome annotation?
annotation whole genome tuberculosis • 2.8k views
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Maybe VEP? http://www.ensembl.org/info/docs/tools/vep/index.html

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If I'm not mistaken SNPEff is (only) for variant annotation. What type of genome annotation would you like to do? Annotation is a quite broad term...

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I have a Pilon, VarScan and BBMap different .snp and .vcf outputs. Need to annotate them (separately) to see a human readable report with gene names and statistical situation printed out. Thank you.

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Maybe VEP? http://www.ensembl.org/info/docs/tools/vep/index.html

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