Is it possible to run and use SAMTools, Picard, Pilon and GATK on Windows through Cygwin or Unixwin?
Is it possible to run and use SAMTools, Picard, Pilon and GATK on Windows through Cygwin or Unixwin? Is there any tutorial, recipe and cookbook on this topic?
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flight22121 •
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My understand and experience suggest that most of these tools works on Cygwin however I have no idea about Unixwin.
@Istvan has noted in biostars handbook that most common unix programs (with exception of
fastq-dumpfrom SRAtoolkit work inubuntu bashincluded with Windows 10.You can read more about the handbook (which requires a purchase) in this thread: The Biostar Handbook. A bioinformatics e-book for beginners.
post some free tutorials on using tools on Windows 10, people will save money for food and clothes
@flight22121 When you're asking someone to help you (for free), the least you can do is to be polite about it.
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