In HUMAnN, it calculates the coverage of pathways from translated searching reads against a diamond database and then using MinPath. In KEGG Maple (discontinued) and …

Hi, How can I extract the hierarchy of the pathways in Kegg using Kegg API? Please let me know if there is any other way …

Is there any resource that groups GOBP pathways into different categories? For example, this website (https://www.genome.jp/kegg/pathway.html) has KEGG pathway map groupings in which pathways are …

Hello there! I am currently having a problem with ID convertion between different databases. What I did; I made meta-analyses of Beta vulgaris and found …

Hi, I plan to use some functions from [**metaboAnalyst**][1], such as, pathway enrichment, but I want to check if their internal KEGG pathways database is …

Hi, Given physical protein protein interaction like String and KEGG pathway. I would like to know how many of KEGG pathways or signaling pathways exist …

Dear all Can anybody tell me how to get interacting pathways form KEGG databases. I have a list of KO numbers with associated multiple pathways. …

Can anybody please let me know the step by step procedure of how to map a drug target to corresponding KEGG pathway? I wish to …

<p>Dear All, <br/> KEGG api has a function "<a href="http://www.kegg.jp/kegg/soap/doc/keggapi_manual.html#label:104">get<em>linked</em>pathways</a>", does anybody know about KEGG api documentation where they define how do they consider pathways …

<p>This question is actually the "sequel" of <a href="http://biostar.stackexchange.com/questions/1478/how-to-do-pathway-mapping-using-kegg-kaas">this one</a></p> <p>After I assign each gene to one or more pathways, how can I see (using …