to separate assembled reads on the basis of size.
Hello,
I have assembled my raw reads into contigs, now I want to remove contigs that have size less that 70,000 bp. How can I do that.
Kindly help it is very necessary for me.
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Brian Bushnell
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faizansaleem1992 •
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faizansaleem1992 •
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Dear Faizan,
This is one of the basic tasks, hence, it has been already answered a couple of times on biostars. For basic questions, you can query google like this
filter fasta on size: biostars.org
This will provide you the answers posted on biostars.org. Your question is highly likely to be closed by admins.
Tip: Before posting try searching on google as mentioned above or use the search box within biostars.
Good luck!
there is written scripts here
http://www.bioinformatics-made-simple.com/2012/07/how-to-filter-sequence-by-their-length.html