how to remove over represented sequence
i have an exome sequencing file that containing four overrepresented sequences once i use trimmomatic and one over represented sequence is removed but my sequence length is 44 after trimming it reduced the length once again done the trimming for removing the adapter sequences but the adapter sequences are not removed how to solve this problem,make any change in trimming command MINLEN.first time my sequence length is 44 now i give MINLEN:36, AFTER trimming sequence length 36-44 in this how to give MINLEN
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asifrayaan05 •
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Is there a clue as to what those over-represented sequences are and why are you removing them?