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How to access the tranche repository (proteomics data repository)?

Hello, everyone

Someone can help-me at to access the tranche repository (Univ. of Michigan) for MS data acquisition?

The URL (https://www.proteomecommons.org/tranche/) does not work. When I try to access, I'm redirected to another page.

Best regards,

repository proteomics
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updated by Lars Juhl Jensen Lars Juhl Jensen • written by Leite Leite

Hello @natasha.sernova I'm trying to download data that was indexed in this database.

So, i've tried this url http://www.tranche.proteomecommons.org/, Which the paper mentioned.

But same message: "Can not access this site Could not find server's DNS address"

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written by Leite Leite

1 answer

The Proteome Commons Tranche sadly shut down around 2013 due to lack of funding. It is a good example why important bioinformatics infrastructure needs dedicated funding and should not have to operate out of research grants for individual groups.

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written by Lars Juhl Jensen Lars Juhl Jensen

Hello Lars Juhl Jensen, thank you very much for the answer. I'm looking at data that was in this database, you know if they were moved to another repository.

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written by Leite Leite

I do not believe all data were systematically moved to another database when Tranche ceased to be. You could trying to search in the PRIDE database; if it is not there your best chance is probably to contact the authors.

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written by Lars Juhl Jensen Lars Juhl Jensen

Thank you so much Lars Juhl Jensen, I'll try contac the authors. Best regards,

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written by Leite Leite

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