TCGA: how to download matched normal and tumor samples from TCGA website.
Hi all I want to download those samples from TCGA website, which have both gene expression and miRNA expression data from both tumor and normal tissues ( matched normal and tumor samples) . If a case only has the tumor sample, I want to filter it out. But I didn't find any tags or conditions to do that. Could anyone help me? Thanks in advance.
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morrovvatim60 •
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morrovvatim60 •
1 answer
you can use firehose: https://gdac.broadinstitute.org/
find which ones are normal/tumor from the TCGA barcode https://wiki.nci.nih.gov/display/TCGA/TCGA+barcode
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