Tool to identify group pair distance & other metrics from FASTQ files
I am looking for a tool or pipeline to identify metrics from FASTQ data such as group pairs distance. I would also like to have other metrics like read distribution.
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bongok •
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written
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onspotproductions
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written
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onspotproductions
2 answers
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Joseph Hughes
Try to revisit this post - A: Estimating Insert Size From Paired End Data.
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Can you clarify what you mean by "group pairs distance"? I've never heard that before; do you mean insert size? And it's also not clear what you mean by "read distribution".
Yes, group pairs distance is the maximum length expected between fragment pairs. These are parameters for Trinity.