Viable pathway tool for T-Cell activation pathway identification
I have a list of genes that are of high expression in activated T-cells. I am looking for a good pathway tool to either identify the list of genes and their connections, or find a single pathway for one of the genes. So far I have had minimal luck using DAVID and reactome. I did however get some results through babelomics snow, I am just unsure how to continue with the data it has generated. I have looked through KEGG and biocarta as well, with minimal success. We are looking for protein effects on RNA processing of other target genes. Strings does a good job in showing relations, however we are less concerned with protein-protein interaction.
• 2,459 views
•
link
updated
by
Ram
•
written
by
onspotproductions
•
written
by
onspotproductions
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
How can we remove a sub-pathway from a parent pathway in Reactome Database?
written by Muiz Khan •
-
pathway genes for mouse
written by rob.costa1234
-
no significant FDR in gene enrichment analysis
written by nazaninhoseinkhan
-
Reactome Pathway Analysis from command line
written by saamar.rajput
-
Pathway analysis programs
written by benzhang •
-
DAVID Fisher Exact Test contingency table
written by igor
-
How to test activation/inactivation of pathways?
written by Lluís R.
-
DAVID inconsistent results
written by mozart.marins12 •
-
Pathway enrichment analysis of gene list
written by onspotproductions
-
Low Coverage in Pathway Enrichment Analysis using DAVID
written by hpw9 •
I'm still confused about what you have and what you want. Can you clarify what you are trying to do?
Yes. We have a list of 13 proteins that showed high expression in Activated T-Cells vs. non activated T-cells. We are attempting to determine how these 13 proteins fit into a T-Cell activation pathway. We want to look at how the proteins act upon the rna, not on each other.