More posts like this
-
Identify trans-regulatory regions
written by carlosalfonsogonzalez6 1Hello everyone I was wondering, Which are the current methods to identify trans-regulatory modules? I have seen in recent articles, the use of hybrids where …
-
Detecting expression in intergenic regions
written by A. Domingues 267**Background** We observed some RNA-seq coverage in regions outside annotated genes - let's called them intergenic. This expression appears to be more pronounced, or unique, …
-
uploading data in UCSC browser
written by vimlakany 0Hi I have *_sorted.bam file (prokaryotic/RNA seq) which i want to upload from my local machine (not making it publicly accessible) to UCSC microbial genome …
-
uploading data in UCSC Microbial genome browser
written by vimlakany 0Hi I have *_sorted.bam file (prokaryotic/RNA seq) which i want to upload from my local machine (not making it publicly accessible) to UCSC microbial genome …
-
Intergenic region expression
written by vimlakany 0Hi, I am looking for novel sRNA through RNA seq expression. Is it possible to set cutoff saying above which the particular intergenic region is …
-
How to say CLC TRANSFACT TFBS plugin that use just intergenic regions?
written by Alireza Ebadi Tabrizi 0Dear All; I want to search the intergenic regions and I use TRANSFAC TFBS plugin in CLC Genomics WB. How to say to this plugin …
-
Strand Specificity and Identification of Antisense RNA
written by vimlakany 0HI I have a set of SRA data (Paired end), for which is it possible to find strand specificity using tools or softwares? And how …
-
Annotating intergenic regions of a genome in an otherwise complete .gbk or .gff file
written by ricky.festa 0Hi, Is there a tool to go through an annotation file and add in an identifier for intergenic DNA? I was thinking that if I …
-
ALEXA-Seq: gene expression above noise level
written by elmbeech 7Lately I was working with the RNA-seq data from a breast cancer cell line panel, which was generated with the ALEXA-seq pipeline. I was fascinated …
-
Identifying Genes That Lie Either Side Of Intergenic Regions
written by ancient_learner 68<p>Hi I want to identify the immediate genes that lie either side of the intergenic regions. how to get that list with positions? fo example …
What effort have you made to answer those questions?
Note: OP changed the original question completely since I wrote the comment.
Hello vimlakany!
We believe that this post does not fit the main topic of this site.
Not a bioinformatics question.
For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.
If you disagree please tell us why in a reply below, we'll be happy to talk about it.
Cheers!