Strand Specificity and Identification of Antisense RNA
HI I have a set of SRA data (Paired end), for which is it possible to find strand specificity using tools or softwares? And how to identify Antisense RNA and trans-encoded RNA?
• 1,943 views
•
link
updated
by
Devon Ryan
•
written
by
vimlakany •
•
written
by
vimlakany •
1 answer
You can use RSeQC to estimate whether the library is stranded or not. Antisense RNA is anything on the antisense side, so write a program for it (they probably already exist, but this is a very simple thing to write).
• 1 views
•
link
written
by
Devon Ryan
Log in to answer this question.
More posts like this
-
RNA-Seq paired-end datasets
written by AIMAR •
-
Is it possible to infer the strand of a variation called using RNA-seq reads?
written by nicolo.gualandi •
-
converting RF strand-specific mRNA sequencing data to FR stand-specific
written by upadhyay.maulik •
-
Intergenic region expression
written by vimlakany •
-
Do you use anti-sens reads for differential gene expression analysis with Stranded Paired-End Libra…
written by ZheFrench
-
sra to fastq
written by vimlakany •
-
How to obtain the strand information from DNA-seq data
written by fengzys
-
Copy Number Variation from paired end RNA-Seq data
written by ChIP
-
CCLE RNA-seq library protocol
written by zju.whw •
-
Download Large Paired-End Rna-Seq And Microarray Data Of The Same Sample (> 10 Gb Of *.Sra Files)?
written by Tianyang Li •
