More posts like this
-
extracting 5'UTR of each gene
written by ashkan
-
coding sequnce read coun
written by ashkan
-
CDS read counts per gene
written by ashkan
-
Ribo-seq vs RNA-seq read count
written by ashkan
-
codon occurrence in the coding sequence in python
written by ashkan
-
correction for multiple testing
written by ashkan
-
problem in results
written by ashkan
-
suitable file for the alignment
written by ashkan
-
cloud based vs local pipeline for RNA-seq data analysis
written by ashkan
-
filtering out the genes in RNA-seq experiment
written by ashkan
Hi,
Can you give us more details please ?
Do you want to extract genes with upstream open reading frames (uORF) from Fastq files (reads from sequencing) ? From your annotation file (GFF) ?
so far I have only fastq files. indeed I want to get rid of those genes with upstream open reading frames (uORF) and filter them from my raw data file.
Hi,
Have a look at this please:
http://upep-scmb.biosci.uq.edu.au/
or you can assemble your reads and then use : http://transdecoder.github.io/