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suitable file for the alignment

Hi Guys,

I am going to analysis RNA-seq data and need the file for the alignment. Would you please let me know where I can get the suitable file for the alignment?

thanks

next-gen alignment
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written by ashkan ashkan

You have taken out important information from this post. Was the answer below not sufficient?

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written by GenoMax GenoMax

1 answer

You can use the cDNA sequences from Ensembl here.
If you don't want the UTR or introns then get the CDS file here.
Check the readme file in both directories for more information.

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written by GenoMax GenoMax

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