Is the first time I look at proteome, I found a pretty interesting place where I can download a few of the results
http://humanproteinpedia.org/HuPA_Download/MS/00001.txt
Im wondering how I can retrieve the possible gens which can code each protein? Is any easy way to get on excel that information from just the sequence identifier?
Thanks!
the column $12 looks like an uniprot identfier, use http://www.uniprot.org/uploadlists/ to convert the identifiers
Thank you so much!!!!!!
Just one question more...
http://humanproteinpedia.org/HuPA_Download/HuPA_Download/MS/00003.txt
In this case dont allow me to use uniprot...any other nice advice? :)))
C: Reliable Database containing info for Entrez ID's and Entrez Symbols
You can also get information on protein ids -> genenames
mmm silly biology question about this proteome tables...Im a bit confuse
peptide sequence sequence Identifier
VLAVNQENEQLmEDYEK 4501891 M12#Oxidation
mLDAEDIVGTARPDEK 4501891 M1#Oxidation
GISQEQmNEFR 4501891 M7#Oxidation
mLDAEDIVGTARPDEK 4501891 M1#Oxidation
Different peptide sequence has same IG number, so I get the same protein at uniprot, is that possible?
Thanks
in proteome can go like that? thanks, I didnt knew it
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While the following two answers are referring to converting ID's, you want to get the sequence for the proteins or DNA?
BTW: You had to mention excel to get the usual flame war started :-)