cummeRbund merge filtered data sets
Hi everyone,
I´m totally inexperienced in RNA Seq, so this is probably a stupid question: I started with cummeRbund for analyzing my RNA Seq data. For generating a heat map, I filtered my data for log2fc <+/-1 with:
filtered_max <- gene.diff[gene.diff$log2_fold_change > 1]
filtered_min <- gene.diff[gene.diff$log2_fold_change <- 1]
So I got 2 different data sets, but how can I merge them to generate the heat map?
Thanks a lot in advance!
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Biostar
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a_j_d_a_n •
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a_j_d_a_n •
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You can also consider using p-value (significant == 'yes') so that you have only statistically significant differentially expressed genes. You can use & between both conditions and write one line to get upregulated (>1) and downregulated (<1) as a single set.
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Satyajeet Khare
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