Package to classify LncRNA into LncRNAs, intronic LncRNAs and antisense LncRNAs
Hi,
LncRNA can be classified into intergenic LncRNAs, intronic LncRNAs and antisense LncRNAs.
I have some lncRNAs' position information in gft format. I konw I can perform this subgroup analysis by comparing with reference genome gtf file. But is there any tools or package or convenient way to perform this classification?
Any suggestion?
Thank you.
1 answer
Please have a look at gffcompare, through which genomic gff file could be used as reference ("-r").
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