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Methylation profile through chromosome

Hello,

I'm looking for some R package or even software to make methylation profile of chromosomes. I found two very nice packages for R:

ChromHeatMap (plots made by this are what I'm looking for) quantsmooth

Unfortunetaly my data isn't ExpressionSet or any object like this, so I don't know how to put it in. My data presentation(simple table in Excel with procentage methylation values): enter image description here

r
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updated by GenoMax GenoMax • written by Adam • Adam

Hello Adam!

Your question was posted twice. Link for the duplicate thread is below.

We have closed one of the copies to allow us to keep similar content in the same thread.

If you disagree with this please tell us why in a reply below. We'll be happy to talk about it.

Cheers!

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written by GenoMax GenoMax

I don't think so that my problem is already solved. Solutions are present for specific datasets from microarrays (ExpressionSet objects). I put my type of data here because there's no solution for type of dataset like this, so that's why I put question here...

• 2 views • link
written by Adam • Adam

You posted the same twice. That's why it was closed once.

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written by WouterDeCoster WouterDeCoster

Biostars has boilerplate text that is sometimes confusing when explaining moderator actions.

I have modified that text above to clarify the reason this copy of your question was closed.

• 1 views • link
written by GenoMax GenoMax

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