How to obtain list of transcription factors and their sequence binding motifs?
Hello,
is it possible (for example via R) to obtain sequence binding motifs of particular transcription factors given as input? From this:
TF motif
MED1
MYB
MYC
NOTCH1
To this:
TF motif
MED1 ACAGATTA
MYB GGCGTAAC
MYC TTAGCGTA
NOTCH1 CCAGTGAT
What I did so far? I used CistromeDB to find peaks (experimental data) that overlap my regions of interest. Now I know that some TF's bind to my region of intrest (peaks), however I'm looking for exact sequence motifs.
Thank you! Adam
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