Rna-Seq pipeline in R
Hello everybody, I am glad to be a member of this great blog.I am analyzing RNA-Seq data right now. I did the analysis with CummRbund however, the reviewers asked to re-run the analysis with read count. my question: Does anyone have detailed easy RNA-Seq workflow in R (from reads to DE genes)?
I appreciate your help
2 answers
This great tutorial on from bioconductor is probably what you need. The tutorial uses DESeq2, but you can have it adapted to other tools as well. http://www.bioconductor.org/help/workflows/rnaseqGene/
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