hi, I do codon usage analysing,but I have some problems in finding the softwares which I need,first of all I want to access NC and GC3s ,then I need NC-pot to draw the plot of NC & GC3s, ...I will be thankfull if help me in this way.
1 answer
See these posts:
How To Perform A Codon Usage Analysis
Amino Acid Content Statistical Test
Finding Frequent To Rare Codon From The Codon Table Of Human
http://www.bioinformatics.org/sms2/codon_usage.html
and these papers:
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2174420/
ACUA: A software tool for automated codon usage analysis (from 2007)
http://www.ncbi.nlm.nih.gov/pubmed/26019240
GC3-biased gene domains in mammalian genomes. (from 2015)
What are your genomes?
Codon usage is slightly different in bacteria, in archaea, in plants and plastids, viruses and bacteriophages,
in mitochondrial genomes, etc?
Most genomes can be found in NCBI, but you have to choose some narrow group.
Log in to answer this question.
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