This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Bioinformatics Tools For Rad-Seq Data

Hi,

I'm quite new to Bioinformatics. I have some RAD data which I need to align first and then draw phylogenetic trees. Can someone tell me what are the tools I can use?

rad-seq
• 4,443 views • link
updated by Ram Ram • written by Kash Kash

Hi kmkdesilva, There are two questions in your post and the first, it seems, is answered. Please consider removing the part about converting .bcl to FASTA. Look on the forum if there is not already a question covering this and otherwise open a new question with it.

• 0 views • link
written by Eric Normandeau Eric Normandeau

1 answer

You might want to have a look at Stacks.

• 96 views • link
written by lelle lelle

Thanks for the suggestion. I'm working on it. But some codes in the manual seems to be not working. Where can I find working codes to install stacks

• 0 views • link
written by Kash Kash

Download Stacks, uncompress the file, from inside the directory, run './configure' then 'make' then 'sudo make install'. This supposes you have Linux or maybe OSX.

• 95 views • link
written by Eric Normandeau Eric Normandeau

Log in to answer this question.

More posts like this