Are there any web-based software for identifying transposons on P. aeruginosa genome? We have some whole genome sequence data (denova assemly). We want to identify the transposons using the whole genome sequence data.
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written
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hgu0618 •
1 answer
Try the following tools:
http://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-015-1860-2
http://www.nature.com.sci-hub.cc/nrmicro/journal/v11/n7/abs/nrmicro3033.html
http://www.nature.com/hdy/journal/v104/n6/full/hdy2009165a.html
These tools below are for higher organisms with introns, sequencing technique does matter:
https://omictools.com/transposon-detection-category
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4696183/
Detecting transposable elements in both assembled genomes and raw reads
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