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Protein family analysis

Hi guys

I have a set of UniProt ID which made from genome scaffold sequences. I wanted to perform protein family analysis and other downstream analysis for those scaffold sequences.

Is there tool/software which could give me information about protein families or clustering them in few groups of proteins?

I mean what kinds of analysis I can do for them?

Many thanks.

protein family cluster genome sequence assembly

set of UniProt ID which made from genome scaffold sequences

Can you clarify what that means?

I mean UniProt ID which made from blastx against nt scaffold sequences

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