Question: Which protein database source you prefer?
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Hi friends

In our projects(down stream analysis) , we look for appropriate source in proteins( protein or domain), human and plants and etc....

Please help me to choose best one,

Which one of the following list you prefer?

1- NCBI Protein/RefSeq

2-Ensemble protein

3-UniProtKB

4-Pfam

5-Kegg Protein

6-RCSB

Thanks ..,,

ADD COMMENTlink 5.3 years ago Whoknows • 740
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you already asked questions on this site https://www.biostars.org/p/111641 ; https://www.biostars.org/p/111708/ ; https://www.biostars.org/p/112125/ ; without validating them.

ADD REPLYlink 5.3 years ago
Pierre Lindenbaum
120k
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Choose NCBI Protein/RefSeq as a protein source for your analysis.

ADD REPLYlink 5.3 years ago
Renesh
♦ 1.6k
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Hello Whoknows!

We believe that this post does not fit the main topic of this site.

Too broad/unclear

For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.

If you disagree please tell us why in a reply below, we'll be happy to talk about it.

Cheers!

ADD REPLYlink 16 months ago
zx8754
7.5k
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The question makes no sense. These all have very different foci, utilities and theoretical underpinnings. Better to just try and understand what they actually do before wasting our time.

ADD COMMENTlink 5.3 years ago cdsouthan ♦ 1.8k
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