Closed:integrated whole genome sequencing and RNA-seq papers?

Question

[epigene]

I'm trying to look into the literature and see what's already published on integrating whole genome sequencing and RNA-seq to find variants that might affect gene expression or alternative splicing or gene fusion etc.

I can find one on PLOS one and I'm wondering if people could suggest other papers on this topic?

Here is the one I found:

Integrated Analysis of Whole Genome and Transcriptome Sequencing Reveals Diverse Transcriptomic Aberrations Driven by Somatic Genomic Changes in Liver Cancers

http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0114263