Masurca completes but the final fast files are empty!!!

I have ran Masurca on some plant genome. I have directed my output to a /tmp folder. Masurca completes but the output files genome.ctg.fasta and genome.scf.fasta are present but empty. What may be the error here? Thanks

assembly

• 1,467 views • link

written 10.1 years ago by mafireyi •

0 answers

No answers yet.

More posts like this

Training Augustus for Gene Prediction
written 1.5 years ago by shiv •

I am working on a plant genome and have a genome FASTA file. I also have GenBank file containing some manually curated reference gene models …
issue with kneaddata
written 2.1 years ago by noorehuma •

Hi, Im running kneaddata and getting the follwoing error. Also the script doesn't fail, it completes its job in 12 hour, I get the decontaminated …
How to detect novel miRNA using mireap
written 4.1 years ago by khq5801 •

I have been using mireap to detect novel miRNA. The command ran successfully and provided an output folder, but in that folder except mireap-xxx.log file …
RepeatModeler - Everything works except LTR Harvest
written 5.8 years ago by selplat21 •

Hello, I have been running RepeatModeler on my de novo assembled genome. I have run it multiple times and it runs for about 4-5 days …
How to build hisat2 index on scaffold level genome assembly
written 6.5 years ago by tulika98 •

Hi everyone, I am trying to build hisat2 index for a yeast strain called RM11-1A. The reference genome is available in scaffolds at: https://downloads.yeastgenome.org/sequence/strains/RM11-1a/RM11-1A_SGD_2015_JRIP00000000/ I …
Homer not finding any genomes?
written 7.4 years ago by fr

I am creating the tagdirectories using Homer but can't get it to find the installed genome. I am running > makeTagDirectory $tagdirname/$filename\_tagDir -format HiCsummary $filename\_Summary.txt …
Using ChIPseeker to annotate the plant data
written 9.4 years ago by Alex •

Hi everyone, At present I want to using the ChIPseeker to annotate my maize Bed files ,while I see the manual ,it's seems that have …
Masurca disk space issue
written 9.9 years ago by mafireyi •

Hi I am running Masurca on a 380MBp genome. I have 861G of disk space and masurca fails writes 818G to this disk. I read …
RepeatModeler finishes without creating output files
written 10.1 years ago by Dave Carlson

Hi All, I am running RepeatModeler on a ~300 mb plant genome assembly to annotate transposable elements. The program successfully runs without error but it …
UCSC BedGraph Issue
written 11.1 years ago by mbio.kyle

I am working with some BS methylation data in BedGraph form. Here is what the data looks like: ``` genome 168326 168326 1 genome 168407 …