XSQ data filtering and conversion to Fastq
Hi every one,
I am new to this field and have recently sequenced whole genome by SOLiD platform. The generated data is in mate pair XSQ format. I am not sure what tools should I use for *.XSQ data filtering and its conversion to Fastq, as we are interested to use either BWA or Botie for reference based alignment.
Currently I am trying XSQ_tools (for conversion to csfasta+qual) and SOLiD_preprocess_filter_V2.pl for filtering csfasta.
Your kind suggestions will be appreciated in this regards.
Please ask if any other information is required to make the query clearer.
Regards
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Naveed Iqbal •
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