Thank you for your answer. That is a very useful tool, and will be using it to explore further. I am actually looking for a list of TFs (e.g. TBP) that are known to bind indirectly to sequence via other TFs. This information can be obtained from various published papers, but I was just wondering if there is a curated list available.
List of Indirectly binding transcription factors
1 answer
Check JASPAR and its publication. They seem to have some cases of multiple binding profiles for a given TF. You can view these CRMs in Ensembl too, as a result of the Ensembl Regulatory Build. Find out the TFs used to annotate a CTCF binding site (for example) on human chromosome 17 in the Region in detail view in the Ensembl browser.
Log in to answer this question.
More posts like this
-
Filtering transcription factor and HOMER and ENCODE
written by qudrat.nii •
-
transcription factor binding site
written by priyadhawan11234 •
-
finding transcription factors for a list of genes
written by avitalwasser •
-
Reference list of cytokines/growth factors
written by sadeghdavoudi •
-
Transcriptional repressors and transcriptional activators
written by Saad Khan
-
Tool for finding inhibitory factors for a list of genes?
written by sviatoslav.kendall
-
Transcription Factors Used By Encode
written by Larry_Parnell
-
Where Can I Find A List Of Human Tfs?
written by Kate
-
Chip- Chip Seq - Seaching For Curated Transcription Factors
written by Anuraj Nayarisseri •
-
How To Identify Targets Of A Transcription Factor ?
written by Khader Shameer
