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Filtering transcription factor and HOMER and ENCODE

Hello,

I have a list of transcription factors identified by HOMER tool form MACS2 peak called. I want to filter this list as it has about 70 TFs. Does anyone know about ENCODE transcription factor database and how to use that database to filter list of transcription factor.

encode transcription-factor homer
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written by qudrat.nii • qudrat.nii

Filter for what?

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written by ATpoint ATpoint

filter to get reduced number of TFs to increase the authenticity

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written by qudrat.nii • qudrat.nii

1 answer

You can use the ENCODE experiment portal, ENCODE

The left tool bar allows you to filter for various tissues/cells (biotypes) and targets. You can use the download button at the top of the search to download the files you want.

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written by rfran010 • rfran010

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