More posts like this
-
How many proteins have less than 3 protein structures in PDB ?
written by srdjanmasirevic2 2Hello, does anyone know how to look for the number of proteins that have not more than 3 protein structures determined and stored in the …
-
Help with record.id
written by Maya 0hello! I'm using pyrosetta and biopython to write a code that folds proteins. I want to make the protein name a variable because I use …
-
Extract domain sequence from whole protein sequence
written by carlosmunozm 0I performed a search for conserved domains in a group of proteins of interest using InterProScan. Now, i know which proteins have that domain, but …
-
Primary sequence of PDB id
written by Bioinformatics313 0I understand that every protein accession may have one or multiple PDB id, and I know each PDB id also can have one or multiple …
-
pdb to dssp
written by uday4vijay 0I have downloaded RS126 dataset and when I extracted it, I got a bunch of files with .pdb extension. I dont know how to open …
-
steps involved in constructing protein structure
written by twisted_helix 0Hello, Could anyone tell how the structural information of a protein is obtained? I would like to know in detail all the steps that are …
-
Non redundant genera database
written by soza 1Hello ladies and gentlemen Can you guys help me? I want to create a database of non redundant sequences of a bacteria genera, how can …
-
how to identify Protein Complexes based on PDB?
written by Mo 92Hello, I would like to know if anyone knows how to identify complex for a list of proteins ID using [PDB][1] Thanks [1]: http://www.rcsb.org/pdb/home/home.do
-
Pymol/Vmd - Switch To Atomic Level
written by testubzy 0Hello, I'm trying to figure out the structure of a protein. So I installed the programs Pymol and VMD which can show the 3D-structure of …
-
How To Extract Patterns From Protein Sequence
written by Hariharan 18<p>I just want to know when a protein sequence is given with a threshold value how an algorithm such as biopm will extract data so …
do you have, and did you try reading, in the bioinformatics toolbox (google, Matlab bioinformatics toolbox). There are a few tools that could help you I think.
Thanks, I discovered a way to do that
glad it helped. post what you used here so that others can see it.