How To Extract Patterns From Protein Sequence
I just want to know when a protein sequence is given with a threshold value how an algorithm such as biopm will extract data so that i can create a phylogenetic tree. Normally what pair wise alignment algorithms do to extract data. whether they use database or they find patterns from the given protein sequence itself.
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Michael Dondrup
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Hariharan •
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Hariharan •
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This question is not very clear. Please provide more context, example data/output, etc. When you say you "want to know when a protein sequence is given with a threshold value ...". What is giving these protein sequences? This is the output from some process/algorithm/software? Which? Tell us more about what your current thoughts on the question are and perhaps it will be more clear how to help ...
please read the paper on BioPM if you want to understand how it works. We cannot do this for you.