@Khader Shameer Do you have any R , python, any approach , example, tutorial , how one can do that? I have been busy for this since few days and I am even not close to understand :-)
how to identify Protein Complexes based on PDB?
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Have you tried 3dcomplex?
I would also recommend looking at CORUM, capturing complexes in 3D/Crystallography is incredibly hard. Affinity/protein-binding based mass-spec experiments and data offers a better coverage for complex data. We have done some complex analyses using Mass-spec data - check our approach here
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Complex as in "biological unit"?
@genomax2 In any unit you can. I was more interested in CORUM but the problem I could not find a way to do it and I found that one can use PDB as well. that is the main reason I asked
REMARK entries (I think it is REMARK 350) in PDB files include information about biological unit constitution.