How to take complete set of protein sequences of all species across the phylogenetic tree from NCBI??
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Downloading protein sequences for a set of gene IDs from NCBI.
written by Naresh
-
Representing phylogenetic tree at atomic level (C,H,N,O,S) instead of protein sequences
written by Naresh
-
How to calculate protein length for species
written by Naresh
-
Files ending with .fna.gz, .gbff.gz, .gff.gz, .faa.gz & gpff.gz
written by Naresh
-
Retrieving large datasets from NCBI
written by Naresh
-
Can we get amino acid sequence translation annotation for all different species in NCBI?
written by Naresh
-
How to take exon sequence of a gene for multiple species??
written by Naresh
-
Which multiple sequence alignment tool works best to compare mutations in a gene in multiple specie…
written by Naresh
-
Can we represent protein sequences at the atomic level, such as carbon, instead of Amino acid to pr…
written by Naresh
-
IGV, sequence alignment
written by Naresh
Isn't that basically the entire content of NCBI protein database (the way you have worded the question)? Did you mean to ask for a specific protein across species (like in homologene section of NCBI)?
I am interested to have complete sets of protein sequences of all different organisms across the entire phylogenetic tree.
Look at homologene. That only covers eukaryotic species.
For everything else you may need to blast, pick you sequences you like yourself.
when i was looking for homologene in NCBI. i could not get it for pf3D7 which is also eukaryotic species.
From Homologene FAQ
Looks like you are going to have to do the blasting and picking of sequences yourself.