This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Can we represent protein sequences at the atomic level, such as carbon, instead of Amino acid to predict protein structure and function

Hi, Can we represent protein sequences at the atomic level, such as carbon, instead of amino acid to study protein structure and function? if so, How to do it?

Please guide me.

Thanks Naresh

sequence
• 1,913 views • link
updated by agata88 agata88 • written by Naresh Naresh

1 answer

As far as I know you can predict the active site of protein in atomic level. Whole protein is to big to run calculation on it. You can use Molden and/or PyMol programs to do that.

I was doing calculation of inhibitor bonding to active sites of protein. I used programs I mentioned and also Gammes or Gaussian.

Hope it helps,

Best,

Agata

• 1 views • link
written by agata88 agata88

Log in to answer this question.

More posts like this