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Where to download complete Genbank file?

I want to download the Genbank file of Anabaena variabilis. It's on NCBI http://www.ncbi.nlm.nih.gov/assembly/276508

This organism has:

(i) a chromosome; (ii) 3 plasmids; and (iii) a non-nuclear incision element.

I can download all of these individually but is there a place where ALL of these (or at least the chromosome and plasmids) are within a single Genbank file? It would be nice if the sequence was on there but if not, it's ok I mainly need the features.

Right now, I have to download them individually, put them in a directory, then bash cat * > complete.gbk

There is a Download the full sequence report but that's not what I need.

genbank genome gene

1 answer

You can get the full genome in GenBank format here.

$ grep LOCUS GCA_000204075.1_ASM20407v1_genomic.gbff 
LOCUS       CP000117             6365727 bp    DNA     circular BCT 28-JAN-2014
LOCUS       CP000119              366354 bp    DNA     circular BCT 28-JAN-2014
LOCUS       CP000120               35762 bp    DNA     circular BCT 28-JAN-2014
LOCUS       CP000121              300758 bp    DNA     circular BCT 28-JAN-2014
LOCUS       CP000118               37151 bp    DNA     linear   BCT 28-JAN-2014

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