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where can i find chromosomes dataset for individuals ?

i downloaded the reference chromosomes (1 to 22, X & Y) but i wonder where can i find chromosomes dataset for individuals ?

snp genotype dataset
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updated by WouterDeCoster WouterDeCoster • written by ahm3dhany • ahm3dhany

See these old posts. I hope they may help you.

Where Can I Get Whole Human Genomes?

Sources Of Publicly Available Human Whole Genome Sequence Data

Another way to find data:

Human Genome Files

This is also useful for training, teaching, etc.

Human NGS Cancer Data for tool development, algorithm benchmarking, teaching, pipeline evaluation, etc.

This is useful post about limitations:

Human Genome Reference characteristics

Probably this is all that is available in UCSC-database:

http://hgdownload.cse.ucsc.edu/downloads.html#human

Another useful site

http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/human/index.shtml

was mentioned by @Neilfws in this post:

A: Shorter Sequences In The Human Genomic Dna Download From Ucsc Genomic Browser We

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written by natasha.sernova natasha.sernova

2 answers

Data from the 1000 genomes project in the ENA.

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written by mastal511 mastal511

Do you know if data is available assembled (which is what OP is asking)?

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written by GenoMax GenoMax

Good point. Probably not.

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written by mastal511 mastal511

I wonder what you exactly want to get out of this, just a fastafile with variant alleles? What with heterozygous positions? Guess what you are looking for is not readily available, so I wonder about your biological question.

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written by WouterDeCoster WouterDeCoster

some operations related to SNPs (genotype to phenotype for example).

• 1 views • link
written by ahm3dhany • ahm3dhany

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