This RNA-seq counts file that I came across contains some values in the chromosome column ranging from values ranging GL000191.1:GL000247.1 The regular 1-22, X, Y, …

I am trying to upload my vcf files on Michigan imputation server. I have a single vcf file containing genotype data. I used these commands: …

I am using *bedtools getfasta* to extract some sequences from the reference genome, hg38. I have the bed file ready but the chromosome numbering is …

Hi, I'm still getting to know STAR and wanted to ask you, if you just use Chromosomes 1 to 22 and X,Y, MT or also …

I'm trying to align RNAseq data with STAR aligner. The reference genome for mice is split in 1-22 + X,Y and MT. Should I create …

Hello, What is the meaning of chromosome starting with letter K (KI270442.1, KI270467.1, KI270589.1,etc) from ensembl database? O only know human chromosome are 1-22, X …

i downloaded the reference chromosomes (1 to 22, X & Y) but i wonder where can i find chromosomes dataset for individuals ?

Hello, I am looking at the human genome available through Bioconductor packages: NCBI GRCh38 and UCSC.hg19. And I do not get all the different sequence …

Hi all, I'm trying to create reference index for all human chromosomes 22+X+Y+M using bowtie2, but its getting stuck after performing some steps.

<p>How can you find out the coordinates of the PAR1 and PAR2 regions on chromosomes X and Y in the Ensembl human reference genome? As …