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Predict Tfbs/Crms For A Species With No Chip-Seq Using Chip-Seq Data In Other Species In The Clade?

Given the ChIP-seq data of a handful of species, for example, a few Drosophila species, are there any tools that will predict TFBSs and/or CRMs for other species in the clade for which there is no ChIP-seq data available?

chip-seq comparative prediction transcription binding
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updated by Ying W Ying W • written by Ahdf-Lell-Kocks • Ahdf-Lell-Kocks

1 answer

maybe you are looking for something like cistargetX?

I remember seeing a paper on using chip-seq from related species (I believed that example was Drosophila) to predict binding but I cannot find it right now

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written by Ying W Ying W

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