This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Chip-Seq Datasets For Cancer Genome Samples?

Are there any publicly available Chip-seq datasets for cancer genome samples? I've seen this paper:

Genome-wide Profiling of Chromatin Signatures Reveals Epigenetic Regulation of MicroRNA Genes in Colorectal Cancer

They did H3K4me3, H3K27me3, H3K79me2 for colorectal cancer samples, but I can't find the fastq files in the public read archives.

cancer chip-seq
• 5,478 views • link
updated by Pedrosaurio • Pedrosaurio • written by Ahdf-Lell-Kocks • Ahdf-Lell-Kocks

2 answers

This one has ChIP-seq data for ER binding in 20 breast cancer tumors, with BAM files in GEO:

Differential oestrogen receptor binding is associated with clinical outcome in breast cancer

http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10730.html

• 53 views • link
written by Rory • Rory

Looking around the SRA can be useful.

Here you have many datasets, not only including Chip-seq for colorectal cancer

http://www.ncbi.nlm.nih.gov/sra?term=%20Colorectal%20Cancer

• 17 views • link
written by Pedrosaurio • Pedrosaurio

Log in to answer this question.

More posts like this