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Visualization of rMATS output

Hey,

I'm using rMATS for the first time for alternative splicing analysis. How do I proceed after running the main script and getting the output? For example, how to visualize the output?

Thanks in advance.

rna-seq
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updated by Y • Y • written by dina.hesham139 dina.hesham139

1 answer

You can visualise your significant differential splicing sites using this tool:

http://www.mimg.ucla.edu/faculty/xing/rmats2sashimiplot/

There is a tutorial on how to run it, and it produces a folder full of pdfs for all your differential splicing events. One thing to note is that it requires an equal number of control and treatment samples, unlike rmats itself.

Jakub

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written by jakub • jakub

Are there any other software(s) that can be used to do this other than rMats2sashimiplot?

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written by Y • Y

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