microRNA seq vs RNA seq

I have 1 RNA seq and 1 microRNA seq.

As to analysis (QC and mapping), can we use the same softwares or different?

Should I download microRNA genomes for mapping?

Thanks~~

rna-seq

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written 10.3 years ago by jolin0701-dy

What do you think? How are they different (in terms of characteristics)?

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written 10.3 years ago by GenoMax

The length is different..

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written 10.3 years ago by jolin0701-dy

How would you account for that in your QC (and subsequent mapping)? Will you need to trim and considering the different length would your strategy be different for the two sets? Would you map to the same database (or use something specialized in case of microRNA)?

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written 10.3 years ago by GenoMax

I see, we should use different software…… thanks for your questions….. I'm a new beginner of rna seq and learning by myself now.. :P

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written 10.3 years ago by jolin0701-dy

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