current version of sowtware
Is there a script that can check for the latest version of a software package such as BedTools or Picard? I am using ubuntu 14.04. Thank you :).
software
• 1,493 views
•
link
updated
by
Madelaine Gogol
536
• |
written
by
bioguy24
23
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
csv to custom manifest file
written by bioguy24 23Is there a tool/script that can convert a csv to bpm? That is using picard I can go from a bpm to csv but can …
-
bowtie2 version-2.1.0 to 2.2.9 installation in ubuntu
written by sontiroy 0I want to install bowtie2 specific version such as 2.2.7 but not the latest version. I am unable to install it from zip file . …
-
VAAST (Variant Annotation, Analysis and Search Tool)
written by nudrylab 0Hello, I have been trying to install VAAST on my computer and I was not able. On my MAC I am receiving this message: > …
-
hg19 transcript mapping or exon overlap
written by bioguy24 23Is there a tool or script that can map or identify what exon the current version of an hg19 transcript overlaps with? I guess like …
-
data directory configuration for mysql-perl script DB
written by logicnmagic 0Nowadays, I am setting database using mysql and perl script package. The name of perl script package is orthomcl. Even though there are some manual …
-
query using mysql on ucsc table browser
written by bioguy24 23I have a folder of 57 text files each with 1000 locations in them. I was going to use the mySQL browser at mysql --user=genome …
-
Forum: computer specs for open-source tools
written by bioguy24 23I am in the process of building a computer. My resources are limited but is an I5 with 16gb, 500gb sata hdd ok for tools …
-
phenotype to associated genes
written by bioguy24 23In preparing for exome analysis, I was wondering if there is a tool or script that can be used to list all genes associated with …
-
Gen file id reordering
written by maroisf 1Hello Biostars, I recently imputed genotyped dataset using SHAPEIT and IMPUTE2. The resulting files are of the gen/sample format (Oxford). Because I am using the …
-
aligner POA no longer active?
written by adrianobacac 0I tried using poa (tool for multiple sequence alignment using partial order graphs) as found on Ubuntu software repository and keep getting error messages about …
both are hosted on github. Cloning the repos should download the latest versions.
Basically no, because there is not centralized repository for all Bioinformatic software. You'll have to, as Pierre points out, go and find each project's home page individually (usually on Github) and check there.
For what its worth, 'apt-get install some_bioinformatics_package' is a sure-fire way to get a 4-year-old version of something.