This is a test version of Biostars. For the public version, visit https://www.biostars.org.
csv to custom manifest file

Is there a tool/script that can convert a csv to bpm? That is using picard I can go from a bpm to csv but can the reverse also be done? Thanks :).

illumina

What's a bpm? CSV is a data format, not a file format. If bpm is a straightforward data format as well, you should be able to parse out fields are write your custom bpm.

Looks like bpm is also in csv format, so OP will probably only need to verify content order and create a soft link.

I will confirm the info and order, but doesn't it need to be binary, that is converted to a binary format? Thanks.

The order is the same:

Index,Name,Chromosome,Position,GenTrain Score,SNP,ILMN Strand,Customer Strand,NormID
1,1:10001102-G-T,1,10001102,0.9040,[A/C],TOP,BOT,6

Do I need to use a specific compression this file to make it binary?

0 answers

No answers yet.

Log in to answer this question.