Converting Entrez Ids To Genomic Intervals In Galaxy · Biostar

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Converting Entrez Ids To Genomic Intervals In Galaxy

As part of a project, I need to use cistrome Galaxy to convert Entrez IDs to genomic intervals. I uploaded the EntrezID list in tabular format, but I'm having trouble getting the corresponding chromosome list. Can someone help me out?

galaxy entrez

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updated 13.0 years ago by Biostar

• written 14.4 years ago by Ctanes •

1 answer

There's probably no way to 'convert' the IDS but you can do a 'join'. If you load in the UCSC genes from the UCSC Table Browser and then do a 'Compare two Datasets'. You can see how to get the Entrez IDs column in UCSC from this link: https://lists.soe.ucsc.edu/pipermail/genome/2010-October/023905.html

This video shows how to use the Join tool: http://screencast.g2.bx.psu.edu/quickie5_join/flow.html

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updated 6.9 years ago by Ram

• written 14.4 years ago by Will

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