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GO enrichment analysis

Hello,

I'm having trouble getting the Gene ontology enrichment analysis of a given dataset to compare the best p values between Aracne and TOM. Please help.

Thanks

go-enrichment-analysis r wgcna

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Hi

I have this code GOenr=GOenrichmentAnalysis(moduleColors, allLLIDs, organism="mouse", nBestP=5); for the GOenrichmentAnalysis

I'm having issues getting the results using Aracne, CLR to compare it with TOM, to see which network construction method is better. What do I need to do in order to get the results from different adjacency such as Aracne, CLR, etc.

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