Hello everyone, I am trying to convert a seg file back into a DNAcopy object. After using the segment() function in the DNAcopy package, you …

Hello, I downloaded the CNA data from TCGA (GDC) which is pre-segmented by CBS using the DNAcopy library from Bioconductors (Level 3). I am currently …

Hello, I find TCGA project using [DNAcopy](https://bioconductor.org/packages/release/bioc/html/DNAcopy.html) to analyze their SNP6.0 data, so I wanna use this package to preprocess Affymetrix SNP array (CEL files) …

Hello everyone, Right now , I am working on biopython (new to python). Under biopython sequencing package, only three command line wrapper are available. BWA, …

Hi, Everyone I am new in use Qiime software to analysis 16S-sequencing data. When I use pick_open_reference_otus.py and want to use rdp classifier method to …

I want to download disease related signaling pathway in Kegg. I tried r package KEGGREST but I don't know how to do it. ***how do …

i have done upto the DNA copy package .. i have generated the graph which tells me in which chromosome there is loss and gain.. …

I want to generate CNA object for DNAcopy. CNA.object<- CNA(snapCGH::: log2ratios(ma), ma$ProbeName, ma$ChrName,ma$Start,ma$Stop, sampleid = colnames(ma$OC1405,ma$OC1663) But it gives me this error error in array(x, …

I am going to do some analysis on Illumina SNP data. I am using illuminaio BioC pacakge to parse my .idat files and also the …

<p>Hi all,</p> <p>For those who are familar with RAE for CNV analysis, I want to ask which data should I use to obtain the CNV*sample …