Rae Work With Tcga Cnv Data
Hi all,
For those who are familar with RAE for CNV analysis, I want to ask which data should I use to obtain the CNV*sample matrix as GBM_MSKCC
RAE uses the segment output of DNAcopy as the input, however I still have no idea which level of data should I use, level2 or level3？ is there any tutorial for RAE&DNAcopy?
Or just could offer the Rscript for me to process the data.
Thanks
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