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lhaiyan3
lhaiyan3
Reputation:
80 (Trusted)
Joined:
11.0 years ago
Last seen:
3.2 years ago
Location:
United States
Latest posts by user
0 votes
0 replies
2.2K views
"htsjdk.samtools.SAMFormatException: Error parsing text SAM file. Not enough fields" wrong message in the chromHMM run
chromhmm samformatexception
written by lhaiyan3 8
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0 replies
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Comment: C: how to make the correct RNA-seq count file for cnvkit import-rna command?
updated by GenoMax 16K • | written by lhaiyan3 8
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0 replies
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Comment: C: how to make the correct RNA-seq count file for cnvkit import-rna command?
updated by GenoMax 16K • | written by lhaiyan3 8
0 votes
3 replies
1.6K views
how to make the correct RNA-seq count file for cnvkit import-rna command?
rna-seq
updated by GenoMax 16K • | written by lhaiyan3 8
0 votes
0 replies
0 views
Comment: C: import-rna assertion error
written by lhaiyan3 8
0 votes
2 replies
2.2K views
cnvkit Error message "length of weights should be the same as the number of probes Execution halted"
sequencing cnvkit
updated by bounlu 27 • | written by lhaiyan3 8
0 votes
1 reply
0 views
Comment: C: Which parameter can be used to set up cutoff not to call peaks <150bp for the ma
written by lhaiyan3 8
1 vote
3 replies
3.4K views
Which parameter can be used to set up cutoff not to call peaks <150bp for the macs2 broad peak calling
chip-seq macs2
updated by ATpoint 9.1K • | written by lhaiyan3 8
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0 replies
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Comment: C: Tool to annotate ChIP-Seq peaks (hg19 or mm10) and find neighboring peaks from m
written by lhaiyan3 8
0 votes
0 replies
1.7K views
ngsplot-how to get multiplot around the IP peak region and the genes nearest to peak region?
chip-seq
written by lhaiyan3 8
0 votes
0 replies
2.9K views
How to do the peakcalling for fly spike-in ChIPseq data
chip-seq
updated by Biostar 380 • | written by lhaiyan3 8
0 votes
1 reply
0 views
Comment: C: How to use GSVA for the RNA-seq RPKM file
written by lhaiyan3 8
0 votes
1 reply
0 views
Comment: C: How to use GSVA for the RNA-seq RPKM file
updated by Kevin Blighe 9.0K • | written by lhaiyan3 8
0 votes
2 replies
0 views
Comment: C: How to use GSVA for the RNA-seq RPKM file
written by lhaiyan3 8
2 votes
19 replies
16K views
How to use GSVA for the RNA-seq RPKM file
rna-seq
updated by Kevin Blighe 9.0K • | written by lhaiyan3 8
0 votes
0 replies
0 views
Comment: C: GSVA on RNAseq data
written by lhaiyan3 8
4 votes
13 replies
16K views
how to use ESTIMATE to infer tumor purity and stromal score from RNA-seq data?
rna-seq
updated by F 0 • | written by lhaiyan3 8
0 votes
1 reply
3.3K views
how to extract the RD, AD, VAF information for the normal and tumor samples from the MuTect2 output vcf file?
exom-seq mutect2
updated by Biostar 380 • | written by lhaiyan3 8
0 votes
0 replies
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Comment: C: comparing single cell RNA-seq and bulk RNA-seq results
written by lhaiyan3 8
0 votes
0 replies
0 views
Comment: C: Best way to present the single cell RNA-seq data and bulk RNA-seq expression dat
written by lhaiyan3 8
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